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Target proteomes (Multi-select; 1–3 recommended)

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Results

Domain architecture

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    HMMER describes family-specific conserved patterns via profile HMMs,

    more sensitive than BLAST for remote homologs.
  







  
Data sources & references

  
The two fungal proteomes below are available in BLAST (databases bc_prot, ss_prot) and HMMER (target proteomes). Please cite the original publication of the genome version used:


  

    
Botrytis cinerea B05.10grey mould fungus

    

      AssemblyGCF_000143535.2 / GCA_000143535.4 (ASM14353v4)
      LevelComplete genome · 18 chromosomes · 42.6 Mb
      Proteins13,703 (11,698 annotated protein-coding genes)
    

    
van Kan JAL, Stassen JHM, Mosbach A, et al. A gapless genome sequence of the fungus Botrytis cinerea. Molecular Plant Pathology. 2017;18(1):75–89. doi:10.1111/mpp.12384

  


  

    
Sclerotinia sclerotiorum 1980 UF-70

    

      AssemblyGCA_001857865.1 (ASM185786v1)
      LevelChromosome · 16 chromosomes · 38.9 Mb
      Proteins11,130
    

    
Derbyshire M, Denton-Giles M, Hegedus D, et al. The complete genome sequence of the phytopathogenic fungus Sclerotinia sclerotiorum reveals insights into the genome architecture of broad host range pathogens. Genome Biology and Evolution. 2017;9(3):593–618. doi:10.1093/gbe/evx030

  


  
Other proteomes (TWCG mulberry, Ciboria shiraiana and mulberry relatives) follow the versions and references of their original publications.






  
Engine: HMMER 3 (Eddy lab, hmmer.org) · Domain library: Pfam-A (EMBL-EBI) · Proteomes: TWCG / C. shiraiana / B. cinerea / S. sclerotiorum / Morus & related species